Package: IPDMR 0.5.2-1
Matt Denwood
IPDMR: Support Code for the Introduction to Practical Disease Modelling Course
A collection of functions and classes that are used to illustrate fundamental concepts of disease modelling as part of a physical course series taught jointly by the University of Copenhagen and University of Sydney. The package is not intended to be used for other purposes; you are welcome to do so, but please note that the package may change without notice in order to suit changes to the associated taught course. All functions, arguments and classes are therefore subject to change without following any form of deprecation process.
Authors:
IPDMR_0.5.2-1.tar.gz
IPDMR_0.5.2-1.zip(r-4.5)IPDMR_0.5.2-1.zip(r-4.4)IPDMR_0.5.2-1.zip(r-4.3)
IPDMR_0.5.2-1.tgz(r-4.5-x86_64)IPDMR_0.5.2-1.tgz(r-4.5-arm64)IPDMR_0.5.2-1.tgz(r-4.4-x86_64)IPDMR_0.5.2-1.tgz(r-4.4-arm64)IPDMR_0.5.2-1.tgz(r-4.3-x86_64)IPDMR_0.5.2-1.tgz(r-4.3-arm64)
IPDMR_0.5.2-1.tar.gz(r-4.5-noble)IPDMR_0.5.2-1.tar.gz(r-4.4-noble)
IPDMR_0.5.2-1.tgz(r-4.4-emscripten)IPDMR_0.5.2-1.tgz(r-4.3-emscripten)
IPDMR.pdf |IPDMR.html✨
IPDMR/json (API)
| # Install 'IPDMR' in R: |
| install.packages('IPDMR', repos = c('https://ku-awdc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/ku-awdc/ipdmr/issues
Last updated 1 months agofrom:1f0b57d041 (on v0.5.2). Checks:1 OK, 11 NOTE. Indexed: yes.
| Target | Result | Latest binary |
|---|---|---|
| Doc / Vignettes | OK | Mar 09 2025 |
| R-4.5-win-x86_64 | NOTE | Mar 09 2025 |
| R-4.5-mac-x86_64 | NOTE | Mar 09 2025 |
| R-4.5-mac-aarch64 | NOTE | Mar 09 2025 |
| R-4.5-linux-x86_64 | NOTE | Mar 09 2025 |
| R-4.4-win-x86_64 | NOTE | Mar 09 2025 |
| R-4.4-mac-x86_64 | NOTE | Mar 09 2025 |
| R-4.4-mac-aarch64 | NOTE | Mar 09 2025 |
| R-4.4-linux-x86_64 | NOTE | Mar 09 2025 |
| R-4.3-win-x86_64 | NOTE | Mar 09 2025 |
| R-4.3-mac-x86_64 | NOTE | Mar 09 2025 |
| R-4.3-mac-aarch64 | NOTE | Mar 09 2025 |
Exports:ab_continuousab_discreteapply_ratesBetweenGroupClassmake_groupmulti_seir_detmulti_seir_stocseir_detseir_stocSEIRclasssi_continuoussi_discretesir_detsir_stocsuggest_boxes
Dependencies:backportscheckmateclicolorspacecpp11deSolvedplyrfansifarvergenericsggplot2gluegtableisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepbapplypillarpkgconfigpurrrR6RColorBrewerRcpprlangscalesstringistringrtibbletidyrtidyselectutf8vctrsviridisLitewithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| A super-simple continuous-time two-compartment model | ab_continuous |
| A super-simple discrete-time two-compartment model | ab_discrete |
| Combine compartment sizes and rates to obtain compartment change values | apply_rates |
| Autoplot methods associated with IPDMR model functions | autoplot.ipdmr_ct |
| Encapsulated OO class for between-group spread models | BetweenGroupClass |
| Discrete-time deterministic and stochastic SIR and SEIR models | group_models seir_det seir_stoc sir_det sir_stoc |
| Generate an object representing a within-group spread model | make_group |
| Discrete-time deterministic and stochastic SEIR models for multiple groups | multi_models multi_seir_det multi_seir_stoc |
| Encapsulated OO classes for within-group SEIR models | SEIRclass |
| A simple continuous-time SI model | si_continuous |
| A simple discrete-time SI model | si_discrete |
| Suggest a number of sub-compartments to obtain a suitable distribution of transition times | suggest_boxes |
